PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013603746.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 206aa MW: 23401 Da PI: 10.0028

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013603746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.1	3.8e-35	29	120	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++l+++l+ k+ XP_013603746.1 29 ACASCKHQRKKCNNECILSPYFPARKSKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRLSEELKLYKS 120 7*************************************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.99	28	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-33	29	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MKERQEGDDM MQRNSNNSNI SHNSPPHQAC ASCKHQRKKC NNECILSPYF PARKSKEFQA 60 VHKVFGVSNV QKMVRTVREE DRTKLSESLT WEALWRQKDP VLGSYGEYRR LSEELKLYKS 120 LVHNQPLVTW NDSNNQQRVF NNSNNNKNGL AVNSSGFGGF SVVNNNGVGV NREIINGGNT 180 SRNLQGGWGN LKQDQRQQCY AVINGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-18	30	115	12	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-18	30	115	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013603746.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603746.1	1e-152	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-104	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	A0A3P6G1H4	1e-140	A0A3P6G1H4_BRAOL; Uncharacterized protein
STRING	Bo8g114670.1	1e-122	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-86	LOB domain-containing protein 2