PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603752.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 186aa    MW: 21996.8 Da    PI: 7.7895
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.56.8e-0975127557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     +r +rk +NRe+A+rsR +K++ +ee      +L+ eN++L +++    ++ +
  XP_013603752.1  75 RRKKRKLSNRESAKRSRVKKQKHLEEMNIQLNQLKIENRELENQIRYVLQHFQ 127
                     799***********************************999988876655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-969122No hitNo description
SMARTSM003382.1E-1071135IPR004827Basic-leucine zipper domain
PfamPF077169.9E-772120IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.93273136IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-975125No hitNo description
CDDcd147029.03E-1876127No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMSTIHPVLS CEPGQTTHVP AFETGFTPWD NSHLFSVFDS SMNIIPHSVH EYLSPDSVNR  60
SGPDVVPTDS YTDERRKKRK LSNRESAKRS RVKKQKHLEE MNIQLNQLKI ENRELENQIR  120
YVLQHFQRTE TENNRLRLEQ RLLHSMVLNI RQVLMLHQID RSSDYVTWPY DNNTRVTVQH  180
DPVCDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380ERRKKRKL
27495RRKKRKLSNRESAKRSRVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603752.11e-137PREDICTED: ocs element-binding factor 1
TrEMBLA0A0D3DRP41e-136A0A0D3DRP4_BRAOL; Uncharacterized protein
STRINGBo8g079020.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.11e-62basic leucine-zipper 5