PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603792.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 249aa    MW: 28403.3 Da    PI: 7.0328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1176127255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++  e+ r+RR+++ s f +Lr +lP+      ++K s ++ +++Av+YIk+L+
  XP_013603792.1  76 KAKRREIGRQRRQEVTSLFKNLRYILPSqY---IKGKRSSSDHVQEAVNYIKDLE 127
                     67778999********************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.42E-872131No hitNo description
SuperFamilySSF474591.07E-1172147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.28474126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-975146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-876127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFASSSLFT ADFAYENELD LSSLITPSTF IPFQEPNPSI PTIHCAGAEN DGRQRIRETT  60
TTDEITNEDV EPKNKKAKRR EIGRQRRQEV TSLFKNLRYI LPSQYIKGKR SSSDHVQEAV  120
NYIKDLEKKI KEISEKRDRI KRSISHSSST GECSIRSLES SYCSCDGYTH IDVKVRTCLV  180
GIEIVASCCF RQESCVSSIL QLLIQEQCLD VVSCISSRLH PRFIHTIVCE VDKGIEVNFL  240
ELQEKLIKM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603792.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603792.10.0PREDICTED: transcription factor bHLH55
SwissprotQ9LN951e-122BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A0D3DXR10.0A0A0D3DXR1_BRAOL; Uncharacterized protein
STRINGBo8g108110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]