PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603807.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 217aa    MW: 24199.6 Da    PI: 4.2011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1813102198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   + ++s  + +p +f e+ + +   +++ +l+ + g +W+v +  +  ++  ++++GW++F+++++Lk+g+f++F +dg+ +f   v+
  XP_013603807.1  13 FFKVF--LSETASESMAIPMSFNEHLEDP--LPRKAKLQGTGGGVWTVSF--TTIRDCAYFSSGWSKFAEDHELKDGEFLTFVYDGHPTF--EVR 99 
                     88999..666777779******9655655..8899***************..666666789************************99988..777 PP

                     EE- CS
              B3  96 vfr 98 
                     vf 
  XP_013603807.1 100 VFG 102
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2210106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.57811104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2011105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-1912101No hitNo description
PfamPF023623.9E-1513101IPR003340B3 DNA binding domain
SMARTSM010192.3E-2113104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAENEDDVAL SRFFKVFLSE TASESMAIPM SFNEHLEDPL PRKAKLQGTG GGVWTVSFTT  60
IRDCAYFSSG WSKFAEDHEL KDGEFLTFVY DGHPTFEVRV FGHSRCKETR AVVETVELSD  120
SDDEEEEDSS VEADGEVEEV SQSIYPVDSN QTVSYDEVVA RVSSTEVTGN PCFTTNLKQR  180
TYELFIPANV VREHALTFGD SIKYIDAEGV MKGGRGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1971065104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-172AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603807.11e-160PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV54e-64REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3DSQ91e-159A0A0D3DSQ9_BRAOL; Uncharacterized protein
STRINGBo8g082670.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-58B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]