PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604055.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 176aa    MW: 20325.9 Da    PI: 10.4347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-061644230
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                    r++ n rE+ RR r+++ f  L +++ + 
  XP_013604055.1 16 REKRNLREKERRTRMKDLFCLLSSHVSPT 44
                    8899*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9441463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-101579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERKREIGEG SALSLREKRN LREKERRTRM KDLFCLLSSH VSPTRRLPVP QLIDEATSYM  60
IKMKENVKYL KEKKKSLLGG EVPGKRSEGS SSLLPKLSIH SRDSIIEMNL IIDVNMKRLM  120
LHELMRVFEE EGAQVMTASL QNLNDRTACT IIAQAFICRI GIDPSRIEKR VRDIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604055.11e-125PREDICTED: uncharacterized protein LOC106311416
SwissprotQ9XIJ18e-91BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A3P6GKP41e-122A0A3P6GKP4_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.1__1131__AT1G10586.12e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-68bHLH family protein