PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604077.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 182aa MW: 20412.8 Da PI: 9.3929

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	42.4	1.6e-13	78	163	13	98
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++d k ++P+ ri++il++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d v + XP_013604077.1 78 VEDAKMIRFPMNRIRRILRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLADCVRE 163 6789999***************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.8E-18	84	162	IPR009072	Histone-fold
Pfam	PF00808	7.5E-21	85	148	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.6E-23	86	162	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVSSKKPNQE KKPRSDGVNK AGGGNTRSSG SKPKKKNTNV QANAKKEPEV HEISESSSSD 60 SAGEARRDEP VKSNGGGVED AKMIRFPMNR IRRILRSDNS APQIMQDAVF LVNKATELFI 120 ERFSEEAYES SVQDKKKFIH YKHLSSVVSN DERYEFLADC VREKLKADVA MEEWERSMTD 180 AG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797148	0.0	KC797148.1 Brassica napus transcription factor subunit NF-YC10C (NF-YC10C) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604077.1	1e-132	PREDICTED: DNA polymerase epsilon subunit 4-like
TrEMBL	A0A078GBI3	1e-131	A0A078GBI3_BRANA; BnaC08g43430D protein
TrEMBL	A0A0D3DYH6	1e-131	A0A0D3DYH6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FMJ5	1e-131	A0A3P6FMJ5_BRAOL; Uncharacterized protein
STRING	Bo8g112740.1	1e-132	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	7e-70	nuclear factor Y, subunit C10