PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604087.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 206aa MW: 23513.2 Da PI: 9.7956

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.9	2.4e-22	51	99	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y + XP_013604087.1 51 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99 689********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.067	43	103	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.3E-23	43	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.63E-22	44	114	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-17	45	65	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-21	53	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-17	65	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-17	80	101	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEEVRETLPT TFLKPNEQLQ IPNVLVTQTK KELTKPRNPK TSRGRLKIEI KEIKEDSKRH 60 VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG HVDSLMDKYL RKIPVNLDVY 120 SGGDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPEWPINMMG 180 WKPQMDMQSM GDVTDGVTRC RLGQNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	6e-14	36	100	9	73	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	6e-14	36	100	9	73	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604087.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604087.1	1e-151	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A0D3DWU6	1e-150	A0A0D3DWU6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GQC4	1e-150	A0A3P6GQC4_BRAOL; Uncharacterized protein
STRING	Bo8g104960.1	1e-151	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17310.1	1e-72	M-type_MADS family protein