PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604126.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 715aa    MW: 80748.6 Da    PI: 8.2788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-1119931194
                    HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    + ++ l++p +f++++ +  + +s+   l +  s ++W++k+  ++++    l++GW+eF+ +n+L+ g +++ +++g++ f  +v
  XP_013604126.1 19 FHTH-LMIPEDFFSKYiE--EGRSMAAELISdASDKKWRLKM--TGRR----LGDGWREFAVDNNLRFGGVLLVRYEGDMVF--HV 93
                    4445.9**********52..567777777765999*******..8888....************************999888..54 PP
2B360.13.9e-19167256293
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f +l+++++l+++ l+lp + ++++g+   + ++++l d   rsW++ l+++k+s+++ +++GW++F+++ng + g f++Fkl+g++ +++v
  XP_013604126.1 167 FVALVTASSLRTDKLYLPQHITSSNGLTR-KCRKIVLVDGGERSWTLDLSFNKSSDTFCMSRGWRNFCEENGQEPGGFFMFKLVGNR-ETPV 256
                     5679999******************9985.557**************************************************9963.3344 PP
3B3491.1e-15345429999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ ++ l+lp  f++e+g++k++  ++ l  ++g +W   l   + +g++ l+kGWk+Fvkang+++g ++ ++  + +++++v+ ++++
  XP_013604126.1 345 YATHHHTLSLPALFVRENGINKPG--EIHLLGKDGTKWPTSLL-VNIRGSMSLGKGWKDFVKANGVESGFTLKLM--W-EDTTPVFCLCSA 429
                     678899*************99766..8***************5.55666789*****************998888..7.788899999985 PP
4B361.41.5e-19489576191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f++ ++++  + ++rlvlp +fa+e++++k   +++ l  ++gr+W  k+ ++ k+gr+ l+kGWk+Fv+an+ k+gD++  +l+++++++
  XP_013604126.1 489 FVTLTITPCCFITCRLVLPAQFARENSLNKL--RMIYLLGRDGRKWLTKI-HQDKKGRMSLGKGWKDFVEANNFKSGDSFAMELIWEDGTR 576
                     5666677777889**************9965..59***************.677777899*************************964432 PP
5B346.28.5e-15616705698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     +++   + + l lp +f++++g++     ++tl   +  +W+ +l    ++g++ l+ GW eF++ang+  g++++++++++ +++++v+k+++
  XP_013604126.1 616 LTPEEVRACKLHLPSEFMKANGINRL--GKITLLGANKMEWSAYL--LTRDGTVALGIGWDEFCEANGVSLGESFTLEFSKEqNRTTPVLKFCS 705
                     4556667788***********99844..48***************..99999****************************998*******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-158101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505899IPR003340B3 DNA binding domain
CDDcd100171.98E-11994No hitNo description
SuperFamilySSF1019362.75E-159103IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-191199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-20159259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-20161264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916166265IPR003340B3 DNA binding domain
CDDcd100172.06E-16166259No hitNo description
PfamPF023621.2E-17167257IPR003340B3 DNA binding domain
SMARTSM010191.1E-22167263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-16335431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-16336427IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617337430IPR003340B3 DNA binding domain
SMARTSM010193.1E-20338430IPR003340B3 DNA binding domain
CDDcd100171.22E-14340428No hitNo description
PfamPF023622.1E-14344429IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-21483587IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-17489580No hitNo description
PfamPF023626.3E-18489577IPR003340B3 DNA binding domain
PROSITE profilePS5086314.96489584IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-18489579IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-26489584IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-18604704IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-17607704IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-10610693No hitNo description
SMARTSM010196.2E-19611707IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73611706IPR003340B3 DNA binding domain
PfamPF023623.6E-13614705IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MAKSRLLRPQ FFHTLVPGFH THLMIPEDFF SKYIEEGRSM AAELISDASD KKWRLKMTGR  60
RLGDGWREFA VDNNLRFGGV LLVRYEGDMV FHVSNLGQNC CEIQDISPPC NKFDKTLLKK  120
RLHPRTQVDR CDEDEDGIEL PRNKKTEMRS PEAEAEPLSS SSDNSCFVAL VTASSLRTDK  180
LYLPQHITSS NGLTRKCRKI VLVDGGERSW TLDLSFNKSS DTFCMSRGWR NFCEENGQEP  240
GGFFMFKLVG NRETPVLSLG LTESNNDTRV CSQASERESL STELSSEDEY IQGESSEDDC  300
SSMESLMETG KKKCSPKRRV TSYASYSSYL PYYKRYVTFT LRHGYATHHH TLSLPALFVR  360
ENGINKPGEI HLLGKDGTKW PTSLLVNIRG SMSLGKGWKD FVKANGVESG FTLKLMWEDT  420
TPVFCLCSAD STSDREQEEY FKAIRKQSLF MDPSNIENSS KDEKNKEENM SWERKKRGRG  480
STPLSLKQFV TLTITPCCFI TCRLVLPAQF ARENSLNKLR MIYLLGRDGR KWLTKIHQDK  540
KGRMSLGKGW KDFVEANNFK SGDSFAMELI WEDGTRMLRL SGAESSSSKA YVSTEAGSSS  600
DSSSSAIQNR SVTLTLTPEE VRACKLHLPS EFMKANGINR LGKITLLGAN KMEWSAYLLT  660
RDGTVALGIG WDEFCEANGV SLGESFTLEF SKEQNRTTPV LKFCSLETNK KVGKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604126.10.0PREDICTED: B3 domain-containing protein REM13-like isoform X2
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A0D3DVL70.0A0A0D3DVL7_BRAOL; Uncharacterized protein
STRINGBo8g099680.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-168DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]