PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604238.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1644aa MW: 180857 Da PI: 7.1813

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.7e-10	856	897	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e ++ +++G++ +k+Ia+ + +t +c+++++k XP_013604238.1 856 PWTSEEKETFLSMLAMHGKD-FKKIASFFT-QKTTADCIDYYYK 897 8***************99.****9.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.11E-14	839	900	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	848	899	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.781	852	903	IPR017884	SANT domain
SMART	SM00717	1.3E-8	853	901	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-8	855	897	IPR001005	SANT/Myb domain
CDD	cd00167	4.08E-7	856	898	No hit	No description
PROSITE profile	PS51293	10.832	1066	1117	IPR017884	SANT domain
SMART	SM00717	2.0E-5	1067	1115	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.16E-8	1070	1117	IPR009057	Homeodomain-like
CDD	cd00167	5.61E-5	1071	1112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1644 aa Download sequence Send to blast
MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSSSHREF SRWGGSADFR 60 RPSSHGKQGG RYQFVEESSH GYTSSRSSAR MFENDYYRPS APRGDWRYTR NCRDDRVPLS 120 QKDWRSNTWE MNNGSYRAFD RPCGVRNGRR SVEERPPPAS DTHTTVVNSW EQPNSAQQMD 180 IELCTPIRTV RSKNEQKFLD QRQSLPSDPH SDGLGLFDRP SSVNSYENKE CSPAKQSNGL 240 MRGRRLADDN SLDPPILNAE IEGTRNQILL KDMHDNKLHG VSDLDGVREN GKENSLGATG 300 KLPMWTRSGS FASQSSGFSH SSSLKSLGAV DSSDGKHKIL PKTVAVTQSS SEDATACAKT 360 TVSEEMSSRK KQRLGWGEGL AKYENKKVDV NTTEDGTDLL ENSAEEIHSL NKNIADKSPT 420 AANAPDYASP TTPSSVACNS SPDKSSAKAA IGASDVSNMC RSPSPVSSIH LERLPINIEE 480 LDNISMERVG CLLNELLGTD DPGTGDSSSV QLTSMKKLLV WKGDILKAVE MAESEIDLLE 540 SKQRALKLEC GRQCRVVGPS SDLPEGDENV QQEASCVLGL KAVAFSVAQT LVRDTVHQAV 600 SAKVPVRIIE DSCREVNALP QFLATVGSNE DILPIPSTKA DSNQETVDLS SADDSMVSDE 660 DLLCAKLLST NKIYASESSQ VFNKLLPRDF SSFDESRLPG RCQRQFDSHV KEKIAERIEV 720 LRAREKILLL QFKAFQLAWK KDVRQLASAK YQSKANKKTE VFPYAKNGAH LKLSQPVRLR 780 LSSSAQRRDS VASTTELVSY MKKLLKNTRL KPFRDILRMP AMILDEKERV RSRFISSNGL 840 IEDPCDVEKE RTMINPWTSE EKETFLSMLA MHGKDFKKIA SFFTQKTTAD CIDYYYKNHK 900 SDCFAKIKKQ RSFGKEGKHT YMLAPTKKWK REMGAASLDI LGAVSIIAAN AGKVASTRQT 960 SSKRITLRGC SSSNSLQRDG NYSEGYSHSF DFPRKRTLGA DVVAVGPLSS EQINSCLRTS 1020 VNSREGCMDH LKFAPAAKKP RISHTTHNEN SNEDDDSCSE ESCGETGPIH WTDAERSAFI 1080 QGFSLFGKNF ASLSRFVRTR SPDQCRVFFS KVRKCLGLEC IQSGSRNVSA SASVDNANEG 1140 GGSDLDGPCA TESNSGICNN GVSSKIGLNT LTSPLNMNQE GANHSGFENV EAGLSRSEQE 1200 NGLALLRLKD GTNLVNTANI NGDSEPCRDL VDINTVESHC QAADQMNSND VLSKDIDEGN 1260 LTSVAAEKIK SSDQLSMEID EGNLTPIAVS SDPLYCGSIV LSNNIVEKGS GCEGAVVPKQ 1320 SSKMQDGVMQ AVNRTRNSGL EAEAAPSSFR YPECLHHVPI EEDLVGVSVP QGDSNCHIEP 1380 ELPNPLVVQT NNMGWQFSEV NLDFDRRSQV LGHVKPEQNG QLHATSTESC QIPWISFTQD 1440 PSRIIRSKSD LIVKAQRTGE AFSLKKCTSS ATKPLTVFQK DGRSGHSRSH SFSLSDTKRL 1500 DKNGDVKLFG TVLTADENGS KQKHNPGGSI RPSSTLSRDH ETGHQYINQQ HLQNVPITSY 1560 GFWDGNRIQT GLTSLPESAK LVASYPEALT THQKQQVVST KEIQLDVSGI LSFGKQIEDR 1620 AEVSSGKDKG KIGGEVNGVA EAAT

Sequence ? help Back to Top

Protein Sequence Length: 1644 aa Download sequence Send to blast

MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSPS SSSSSSHREF SRWGGSADFR  60
RPSSHGKQGG RYQFVEESSH GYTSSRSSAR MFENDYYRPS APRGDWRYTR NCRDDRVPLS  120
QKDWRSNTWE MNNGSYRAFD RPCGVRNGRR SVEERPPPAS DTHTTVVNSW EQPNSAQQMD  180
IELCTPIRTV RSKNEQKFLD QRQSLPSDPH SDGLGLFDRP SSVNSYENKE CSPAKQSNGL  240
MRGRRLADDN SLDPPILNAE IEGTRNQILL KDMHDNKLHG VSDLDGVREN GKENSLGATG  300
KLPMWTRSGS FASQSSGFSH SSSLKSLGAV DSSDGKHKIL PKTVAVTQSS SEDATACAKT  360
TVSEEMSSRK KQRLGWGEGL AKYENKKVDV NTTEDGTDLL ENSAEEIHSL NKNIADKSPT  420
AANAPDYASP TTPSSVACNS SPDKSSAKAA IGASDVSNMC RSPSPVSSIH LERLPINIEE  480
LDNISMERVG CLLNELLGTD DPGTGDSSSV QLTSMKKLLV WKGDILKAVE MAESEIDLLE  540
SKQRALKLEC GRQCRVVGPS SDLPEGDENV QQEASCVLGL KAVAFSVAQT LVRDTVHQAV  600
SAKVPVRIIE DSCREVNALP QFLATVGSNE DILPIPSTKA DSNQETVDLS SADDSMVSDE  660
DLLCAKLLST NKIYASESSQ VFNKLLPRDF SSFDESRLPG RCQRQFDSHV KEKIAERIEV  720
LRAREKILLL QFKAFQLAWK KDVRQLASAK YQSKANKKTE VFPYAKNGAH LKLSQPVRLR  780
LSSSAQRRDS VASTTELVSY MKKLLKNTRL KPFRDILRMP AMILDEKERV RSRFISSNGL  840
IEDPCDVEKE RTMINPWTSE EKETFLSMLA MHGKDFKKIA SFFTQKTTAD CIDYYYKNHK  900
SDCFAKIKKQ RSFGKEGKHT YMLAPTKKWK REMGAASLDI LGAVSIIAAN AGKVASTRQT  960
SSKRITLRGC SSSNSLQRDG NYSEGYSHSF DFPRKRTLGA DVVAVGPLSS EQINSCLRTS  1020
VNSREGCMDH LKFAPAAKKP RISHTTHNEN SNEDDDSCSE ESCGETGPIH WTDAERSAFI  1080
QGFSLFGKNF ASLSRFVRTR SPDQCRVFFS KVRKCLGLEC IQSGSRNVSA SASVDNANEG  1140
GGSDLDGPCA TESNSGICNN GVSSKIGLNT LTSPLNMNQE GANHSGFENV EAGLSRSEQE  1200
NGLALLRLKD GTNLVNTANI NGDSEPCRDL VDINTVESHC QAADQMNSND VLSKDIDEGN  1260
LTSVAAEKIK SSDQLSMEID EGNLTPIAVS SDPLYCGSIV LSNNIVEKGS GCEGAVVPKQ  1320
SSKMQDGVMQ AVNRTRNSGL EAEAAPSSFR YPECLHHVPI EEDLVGVSVP QGDSNCHIEP  1380
ELPNPLVVQT NNMGWQFSEV NLDFDRRSQV LGHVKPEQNG QLHATSTESC QIPWISFTQD  1440
PSRIIRSKSD LIVKAQRTGE AFSLKKCTSS ATKPLTVFQK DGRSGHSRSH SFSLSDTKRL  1500
DKNGDVKLFG TVLTADENGS KQKHNPGGSI RPSSTLSRDH ETGHQYINQQ HLQNVPITSY  1560
GFWDGNRIQT GLTSLPESAK LVASYPEALT THQKQQVVST KEIQLDVSGI LSFGKQIEDR  1620
AEVSSGKDKG KIGGEVNGVA EAAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	814	904	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	814	904	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604238.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604238.1	0.0	PREDICTED: uncharacterized protein LOC106311574
TrEMBL	A0A0D3DS76	0.0	A0A0D3DS76_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GBB0	0.0	A0A3P6GBB0_BRAOL; Uncharacterized protein
STRING	Bo8g080840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein