PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604655.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 303aa MW: 33315.9 Da PI: 8.6208

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	169.5	1.8e-52	152	293	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp+++rr+ + +++ss+++++ + ++s+++++ +++++s++ XP_013604655.1 152 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSHRRSVSR-SSSSSSDRNKKLKIDSSDKPKSV----------LIVPTTTSRQ 235 6789*****************************************9533.33333333333344444444433..........3333334444 PP DUF702 99 elet.sslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 e+++ ++lP +++++avf+++rv++v++ +++e++Yq++v+i+GhvfkG+L+++G+++ XP_013604655.1 236 ETSFkERLPGKIEAPAVFKRTRVTAVSNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 293 4443045***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-47	154	292	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-26	155	197	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-28	242	291	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGCVLLRHKY QCSMNQIVFQ FSSHIFFVQI GSGEIPDETT LVCSRGSDSA LELLSTCKLA 60 NLTVKAELGC CLLHRSGRLT IDGCVLQCET NPLDHLSCPI VSTAGGDEED NLSCHVEVKE 120 TVVEKIKGNS VTGKLHGGGD VNNKSSRNSN VEEKVCKDCG NRAKKECLFE RCRTCCKSRG 180 YNCATHVKST WVPSSHRRSV SRSSSSSSDR NKKLKIDSSD KPKSVLIVPT TTSRQETSFK 240 ERLPGKIEAP AVFKRTRVTA VSNNEQAEIG YQATVTISGH VFKGFLHYYG VDHNKSFLCL 300 SNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604655.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604655.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Refseq	XP_013604656.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9M2U4	1e-78	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A0D3DT08	0.0	A0A0D3DT08_BRAOL; Uncharacterized protein
STRING	Bo8g083660.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	4e-78	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]