PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605259.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25331.4 Da    PI: 9.5792
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
  XP_013605259.1  9 KRIEDVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
                    79***********************************************86 PP
2K-box49.91.4e-17831779100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkklee 100
                     ++++  ++l++e+a   ++i+ Lq   R+l+G+dL s+s++eL+++ +++eksl+ +Rs+K +l  ++ie+l+     ++e+ +e+ +Lr+++ee
  XP_013605259.1  83 QKQQYVQELKNEMAITMDKIKLLQLHCRKLMGQDLYSCSVEELKEITTKIEKSLTIVRSRKAKLNEDKIEKLKAEivaQREVLNEKSSLRQMFEE 177
                     5677889*****************999**********************************************8633367788888999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.272161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-29323IPR002100Transcription factor, MADS-box
CDDcd002657.79E-39368No hitNo description
SuperFamilySSF554551.18E-29371IPR002100Transcription factor, MADS-box
PfamPF003195.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1684175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.53188181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVRGKIEIKR IEDVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS  60
DMQKMIERCE IHRGEYFGAQ RLQKQQYVQE LKNEMAITMD KIKLLQLHCR KLMGQDLYSC  120
SVEELKEITT KIEKSLTIVR SRKAKLNEDK IEKLKAEIVA QREVLNEKSS LRQMFEEQPL  180
WIQSRSLESE KSAPSYSCGN MNLSDVETDL SIGLPQSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-19166166MEF2C
5f28_B8e-19166166MEF2C
5f28_C8e-19166166MEF2C
5f28_D8e-19166166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893094e-94AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605259.11e-160PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ9FLH52e-70AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A0D3DMU91e-158A0A0D3DMU9_BRAOL; Uncharacterized protein
STRINGBo8g050720.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.26e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]