PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605590.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 182aa    MW: 20547.6 Da    PI: 9.075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.0001938751254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  XP_013605590.1 38 RKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75
                    66777799********999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1372675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-93794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-64480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFSRDAGMM MENKRSVCSL EESSIKRHKS DLSFSSKRKD KAGDRISALQ QIVSPYGKTD  60
TASVLQDALH YIEFLHEQVK VCPFLFISVQ YHYHLPTMIL SSSYLRKRHV LLVQVLSAPY  120
LQTMTAATQE ELEQYSLRNR GLCLVPMEYT AGVAQSNGAD IWAPVKTPPS PAFGVKSQSP  180
FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892291e-112AC189229.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605590.11e-135PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_013605591.11e-135PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_013605592.11e-135PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ7XJU22e-87BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A3P6BQN11e-123A0A3P6BQN1_BRACM; Uncharacterized protein
TrEMBLA0A3P6F7S51e-126A0A3P6F7S5_BRAOL; Uncharacterized protein
STRINGBo8g005780.11e-100(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.22e-97bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]