PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605820.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 336aa MW: 35852.8 Da PI: 9.8469

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	70	128	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e alkcprCds ntkfCyynny+l+qPryfCkaCrryWt+GGalrnvPvGgg+rkn k+ XP_013605820.1 70 EGALKCPRCDSINTKFCYYNNYNLTQPRYFCKACRRYWTRGGALRNVPVGGGCRKNSKK 128 5689****************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	55	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009625	Biological Process	response to insect
GO:0009753	Biological Process	response to jasmonic acid
GO:0010439	Biological Process	regulation of glucosinolate biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MPTNSNHHQH QLHENGSLVS GHGLLSQQLP PCPPNPNPNN HYAAVASGLP ARLGGSMAER 60 ARQAKAPPPE GALKCPRCDS INTKFCYYNN YNLTQPRYFC KACRRYWTRG GALRNVPVGG 120 GCRKNSKKGK NGNSKSSSSL SKQSSSTVND PSSNSGQLRT NYQFPFLPTL HNLTQLGGIG 180 LNLAATNGNN QGHEIGSSLM NDLGFLHVGN GRNIAAPISG NIHDNNNNGA SSLMGHFSLF 240 DPTTGLHAFQ NGGNIVNNVG ISFSSTSMVD SRAYQAAPVK MEEQPGLVNL SRPVSGLVNL 300 SRPVSGLTSP GNLTNQYLWN SSDFSGPSSN DHHQLL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In roots, confined to the central cylinder (vascular tissue and pericycle) of both main and lateral roots. In leaves, expressed in the vasculature, mostly in phloem cells. Also present in the vasculature of stems and in stamen filaments of flowers. Detected at low levels in the vasculature of petals and carpels. {ECO:0000269\|PubMed:16740150}.
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature (mainly in the phloem and associated cell files) of cotyledons, leaves, roots, flower stalks and petals (PubMed:10758484, PubMed:16740150, PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) form a short-range concentration gradient that peaks at protophloem sieve elements (PSE) (PubMed:30626969). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605820.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ584285	0.0	FJ584285.1 Brassica rapa subsp. pekinensis OBF binding protein 2 Dof1.1-2 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605817.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like isoform X1
Refseq	XP_013605820.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like isoform X3
Swissprot	Q8L9V6	1e-152	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	A0A0D3DJB9	0.0	A0A0D3DJB9_BRAOL; Uncharacterized protein
STRING	Bo8g010700.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	1e-122	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]