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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013606001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GRAS |
| Protein Properties |
Length: 493aa MW: 54815 Da PI: 5.7495 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013606001.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 320.6 | 3.2e-98 | 118 | 486 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91
lv+lL+++A+a d++ l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++ + ++ ++ p ++ + ++ ++++ a+++++++sP++
XP_013606001.1 118 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFQMLQNMSPYI 210
689******997554433349***********6666659*************987777..666666625555555669999************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
+f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp +lRiT+++++++g s +++e g+rL+ fAe++g pf+++
XP_013606001.1 211 NFGYLTATQAILEAVQYERRIHIVDYDITDGVQWPSLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-C 304
*********************************************765446*********999999999***********************9.7 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276
+ +++++++L++ +gEa+++n+vl+l r+ +++ ++ ++L+ k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+
XP_013606001.1 305 RMESDTFNPSSLKLVRGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLLHQFSAIFDSLEAG-- 394
889*****************************98888887...9**********************9**************************.. PP
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
+r +vEr+++g++++++++ ++ e++++W +l + GFkpv++s + +qaklll+ ++ dgy vee ++ lvlgWk+r+Lvs+
XP_013606001.1 395 ---PARGFVERVIFGPWVSDWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGVEELgQNGLVLGWKSRRLVSA 483
...9*******************99997..99*************************************.******98789999*********** PP
GRAS 371 SaW 373
S+W
XP_013606001.1 484 SFW 486
*** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 493 aa
Download sequence Send
to blast |
MHCPFFFIIS MTMNHPYDDF PNLLFSNNTA TATATSTSSC VEQHDGIISL DMDWDCDFHD 60
LIESMMSDKG ATTESPPVLP CYHGQEGISN SSSTGLSMAD ELDHDVEAEA DESKGLRLVH 120
LLVAAADASI GADKTRELTR VLLAKLKDMT STNDRTNMER LAAHFTNGLS KLHKEANVQR 180
QYGPHQHPDV HDRVDVMLAF QMLQNMSPYI NFGYLTATQA ILEAVQYERR IHIVDYDITD 240
GVQWPSLMQA LVSRNTGPSA QHLRITALSR ATNGKKSVAA VQEAGRRLTA FAESIGQPFS 300
YHHCRMESDT FNPSSLKLVR GEAVVINCVL HLPRFSHQPP NSIISFLSEA KTLNPKLVTL 360
VHEEVGLVGN QGFLYRFMDL LHQFSAIFDS LEAGPARGFV ERVIFGPWVS DWLTRIAITA 420
EVESFASWPL WLATNGFKPV EVSFANRCQA KLLLSLFNDG YGVEELGQNG LVLGWKSRRL 480
VSASFWASCE SSE
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242553 | 0.0 | JX242553.1 Brassica oleracea isolate BoNSP2 nodulation signaling pathway 2-like protein gene, complete cds. |
