PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606593.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 216aa MW: 23119.8 Da PI: 9.8674

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	6.2e-39	11	176	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + +s +s+ + + XP_013606593.1 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvS--ASLRGNSTTT-Tncslsss 102 79*************************************************************99999777331..2222222222.12456666 PP TCP 89 ............................................kaaksaakskksqksaasalnlak.esraka 118 + a++++ +++q++aa l +++ +++++a XP_013606593.1 103 ldhkpllgsspfilgkrvradedtpsgfwavparpefgqvwsfaAGATQEMFLQQQQQQAA-GLFVHHqQQQQQA 176 7778888999999999999999999999999999999999998644444544444444444.3444441333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	16	70	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-34	16	174	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTTNCSLS SSLDHKPLLG SSPFILGKRV 120 RADEDTPSGF WAVPARPEFG QVWSFAAGAT QEMFLQQQQQ QAAGLFVHHQ QQQQQAAMGE 180 ASAARVGNYL PGHLNLLASL SSGAPGSGRG EDDDQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606593.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606593.1	1e-159	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-104	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3E1M3	1e-157	A0A0D3E1M3_BRAOL; Uncharacterized protein
STRING	Bo9g014260.1	1e-158	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-76	TCP family protein