PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606641.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 213aa    MW: 24370.4 Da    PI: 10.3732
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58.1e-15141195458
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     +kr +r+ kNRe+A rsR+RK+a+i eLe ++  L++eN +Lk + e+++ ++a+
  XP_013606641.1 141 DKRHKRMTKNRESAARSRARKQAYINELELEIVHLKKENARLKRQEEQMQLKMAE 195
                     8***************************************999887777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-13133194No hitNo description
SMARTSM003381.2E-12138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909140190IPR004827Basic-leucine zipper domain
PfamPF001704.2E-12141190IPR004827Basic-leucine zipper domain
CDDcd147072.02E-23142192No hitNo description
SuperFamilySSF579598.13E-11142193No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLSSAKHKIN YSAFSIPSST SSSLSHSLSQ TKNMTQVTME EVWKEINLAS LHQHRRLNID  60
HEPVLSNQNP NNSIFQDFLN KPLNQEPPPS SSSTHHGSLL APPATVISFN PHSIDTHFDE  120
SAMFGCFGKK RGQDSDESRG DKRHKRMTKN RESAARSRAR KQAYINELEL EIVHLKKENA  180
RLKRQEEQMQ LKMAEATQHQ TKKILQRSWT SPF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606641.11e-158PREDICTED: protein FD-like isoform X1
SwissprotQ7PCC65e-83FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A0D3E3731e-142A0A0D3E373_BRAOL; Uncharacterized protein
STRINGBo9g024710.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.27e-81basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]