PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606771.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 337aa MW: 37174.4 Da PI: 7.8833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.7e-10	170	217	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq XP_013606771.1 170 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 217 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.85E-11	164	221	No hit	No description
SuperFamily	SSF47459	2.88E-17	164	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-18	166	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.624	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-7	170	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEKQTLKYLP LGQSDPFGNV IGNGNGNEGT IGDLLGRFRN CPQESFSAGI RFPPYPGQFG 60 SDRDSNKSSL LDPDSDRVQT PKPNPRKRKS IPVGNGKDSP ASSSLTASHS KVSGENVGSK 120 DGKRSKHDEA GSSKNVIDKC DDSKGDNKDD AKPTKDYIHV RARRGQATDS HSLAERARRE 180 KISERMTMLQ DLVPGCNRIT GKAVMLDEII NYVQSLQRQV QFLSMKLATV NPRMEFNANA 240 ALSTEMIQQG ESLTQSLYAM ACSEQRLPSG GYYSLAKNMP RFSDTHFPSS DGFVQTETQG 300 FWENDLQSIV QMGFGDIQQQ QSNNNCPEPT LQMKLEP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.14903	1e-156	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00376	DAP	Transfer from AT3G23690	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606771.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065441	0.0	AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBank	AY096536	0.0	AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606771.1	0.0	PREDICTED: transcription factor bHLH77-like isoform X1
Swissprot	Q9LK48	0.0	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A3N6Q5J0	0.0	A0A3N6Q5J0_BRACR; Uncharacterized protein
STRING	Bo1g101470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-173	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]