PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606854.1
Common NameBo_7580
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 206aa    MW: 23288.7 Da    PI: 4.6716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16109159255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  XP_013606854.1 109 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESNVDAARAYDCAAFKLRG 159
                     7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-31108168IPR001471AP2/ERF domain
PROSITE profilePS5103224.395109167IPR001471AP2/ERF domain
SMARTSM003801.0E-35109173IPR001471AP2/ERF domain
PfamPF008473.5E-11109159IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22109168IPR016177DNA-binding domain
CDDcd000186.24E-29109167No hitNo description
PRINTSPR003673.8E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.8E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAAFEESSDL DAIQEHLLED FLVADGFMGD FDFNASFVSG LWCIEPVMNQ VPKQEPDSPV  60
LDPDSFVREF LQVEAESSSE QNSSPHETDQ SVSPRKEAKR LEEEEEPRHY RGVRRRPWGK  120
FAAEIRDPAK KGSRIWLGTF ESNVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPVNLG  180
RKRKRSDVQE ELQRSQSNSS SSSSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28108168464ATERF1
3gcc_A2e-28108168464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.136020.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
GenBankHQ6139480.0HQ613948.1 Brassica napus ethylene response factor 50 (ERF50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303211.11e-150ethylene-responsive transcription factor ERF106-like
RefseqXP_013606854.11e-150PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-110EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0D3EH661e-149A0A0D3EH66_BRAOL; Uncharacterized protein
TrEMBLG9BLT11e-149G9BLT1_BRANA; BnaCnng36390D protein
TrEMBLQ6V5J81e-149Q6V5J8_BRAOL; AP2 transcription factor/ethylene response element
STRINGBo9g175610.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-106ERF family protein
Publications ? help Back to Top
  1. Fiebig A,Kimport R,Preuss D
    Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(9): p. 3286-91
    [PMID:14970339]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]