PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606952.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 261aa MW: 29239.6 Da PI: 6.8548

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.3e-30	78	131	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_013606952.1 78 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 131 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	75	134	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-20	75	135	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-31	77	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	79	131	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-8	81	130	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MREEDYNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL RSPNQPQPQT TPPPQQTNSS 60 AEFAVDSSGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE 120 NVASHLQKYR LYLKRMQSGG GGGGNDVGES DHLFASSPVP THFLHPTARQ SSDHFVPSFV 180 PIASLQHHQP QFLHRQISAV NFTSHANNSN GKAMDQSLFL ARQSHHQQQQ QVLTRSQVAN 240 YADDLEQGAN TVLTLFPTRE N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	6e-33	78	134	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.8949	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606952.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606952.1	0.0	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	2e-57	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D3EHP4	0.0	A0A0D3EHP4_BRAOL; Uncharacterized protein
STRING	Bo9g177390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	5e-99	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]