PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607098.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 330aa MW: 37289.5 Da PI: 8.679

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99	6.8e-31	24	100	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg++t+W+m+eyrl XP_013607098.1 24 AIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSESARPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 100 45789**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.259	1	121	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-35	22	121	IPR003441	NAC domain
Pfam	PF02365	2.5E-13	28	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MVSFKDYILL NVDYRCVLCA AMAAIGEKEW YFYVPRDRKY RNGDRPNRVT TSGYWKATGA 60 DRMIRSESAR PIGLKKTLVF YSGKAPKGTR TSWIMNEYRL PHHETEKYQK AEISLCRVYK 120 RPGVEDHLSL PRSLSTRHHN HTSSSSRLAL RQKQQHHSSS SNHSDNNLNN NNNLEKLSTE 180 YFGDGSSITT TNSNSDVTIA LANQNIYRPM PYGVSNTPMI STTNKEDDEN AIVDDLQRLV 240 NYQISDGGSN INHQYYQIAQ QFHNQQEVNA NALQLVAGAT TVALTPQTQA ALAMNMIPAG 300 TIPNSALWDL WNPLVPDGNR DHYTDSFQGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	23	121	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	23	121	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	23	121	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	23	121	66	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-35	23	121	69	168	NAC domain-containing protein 19
3swm_B	1e-35	23	121	69	168	NAC domain-containing protein 19
3swm_C	1e-35	23	121	69	168	NAC domain-containing protein 19
3swm_D	1e-35	23	121	69	168	NAC domain-containing protein 19
3swp_A	1e-35	23	121	69	168	NAC domain-containing protein 19
3swp_B	1e-35	23	121	69	168	NAC domain-containing protein 19
3swp_C	1e-35	23	121	69	168	NAC domain-containing protein 19
3swp_D	1e-35	23	121	69	168	NAC domain-containing protein 19
4dul_A	1e-35	23	121	66	165	NAC domain-containing protein 19
4dul_B	1e-35	23	121	66	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269\|PubMed:17653269}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607098.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189452	0.0	AC189452.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB072E02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607098.1	0.0	PREDICTED: NAC domain-containing protein 55-like isoform X2
Swissprot	Q9ZVP8	1e-162	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0D3E7K3	0.0	A0A0D3E7K3_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6TUH6	0.0	A0A3N6TUH6_BRACR; Uncharacterized protein
STRING	Bo9g071690.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-149	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]