PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607436.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 239aa    MW: 26443.3 Da    PI: 9.0207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2054103355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ykGVr+++ +g+++AeIrdps+ng  +r +lg++ t+eeAa a+++a+ k++g
  XP_013607436.1  54 YKGVRRRP-WGKYAAEIRDPSKNG--TRMWLGTYETPEEAAVAYDQAAFKMRG 103
                     9*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-3853117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3253112IPR001471AP2/ERF domain
PROSITE profilePS5103224.05253111IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2353112IPR016177DNA-binding domain
CDDcd000183.09E-3054113No hitNo description
PfamPF008473.7E-1454103IPR001471AP2/ERF domain
PRINTSPR003675.1E-135465IPR001471AP2/ERF domain
PRINTSPR003675.1E-1393113IPR001471AP2/ERF domain
Gene3DG3DSA:3.90.45.103.3E-11141231IPR023635Peptide deformylase
SuperFamilySSF564203.27E-10142231IPR023635Peptide deformylase
PfamPF013276.6E-8143229IPR023635Peptide deformylase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGELSWDNG SAVLDWIRRQ LLEDDDIDLT ASRSLATDSS SSSSSVPPRR GATYKGVRRR  60
PWGKYAAEIR DPSKNGTRMW LGTYETPEEA AVAYDQAAFK MRGSKAMLNF PHLISSAQEA  120
QAVKVSNCES GFRQLGIQLL PEEIGSERIQ KIIDDMVKVM RLAPGVGLGL AAPQIGVPLR  180
ASSWSSSFER GMIKPVFVVM IQIIVLEEET SAQNRRLFDL MVMVNPELKA SNLGKQGKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3050118270ATERF1
3gcc_A4e-3050118270ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607436.11e-175PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A0D3DZJ31e-129A0A0D3DZJ3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DX051e-133A0A3P6DX05_BRAOL; Uncharacterized protein
STRINGBo9g001020.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-36ethylene-responsive element binding factor 13