PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607451.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 373aa MW: 42360.9 Da PI: 5.1284

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134	1e-41	5	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 p+GfrF+Pt +el+++yLk+kv +k+ ++e+i+e++i+ ++P+ Lp+ k+++++ wyfF++r+ + ++ +k ++r+t sg+Wkatg d+++ XP_013607451.1 5 PVGFRFSPTGQELINHYLKNKVLDKPWLVDEAINEINICAHDPKFLPAlsKLDSKDLVWYFFCRREYHVSEkKKGTKRTTPSGFWKATGVDRKIR 99 89**********************999999***********5347777778****9998862667888*************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg ++g+kktLv+y+g++ +g t Wvmhey++ XP_013607451.1 100 D-KGVEIGIKKTLVYYEGKSTNGAWTPWVMHEYHI 133 .9999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.903	4	151	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-46	4	151	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	5	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MKKKPVGFRF SPTGQELINH YLKNKVLDKP WLVDEAINEI NICAHDPKFL PALSKLDSKD 60 LVWYFFCRRE YHVSEKKKGT KRTTPSGFWK ATGVDRKIRD KGVEIGIKKT LVYYEGKSTN 120 GAWTPWVMHE YHITSLPPSQ RNYVICQVMY KGADGDSLYG NNSNELSHST MVSDLNTVRE 180 INTAPEVEQP TEEDFYMSWD DLANPLNEQD DPSLFNPDTF FNDDYCPYQQ QPQAPCDDDY 240 INKLLSFNGG NYADVLGDLD ITMQEHRNDH RPTKALTGII VDCSSDNDAK SISATVSMLE 300 PIIINLTCLF QRLVMVKNGS SNALLSSTSW FCYKIPTSEK MTLWTTDTMN PVVIGSQAVV 360 VMIGDERNVL SNM

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MKKKPVGFRF SPTGQELINH YLKNKVLDKP WLVDEAINEI NICAHDPKFL PALSKLDSKD  60
LVWYFFCRRE YHVSEKKKGT KRTTPSGFWK ATGVDRKIRD KGVEIGIKKT LVYYEGKSTN  120
GAWTPWVMHE YHITSLPPSQ RNYVICQVMY KGADGDSLYG NNSNELSHST MVSDLNTVRE  180
INTAPEVEQP TEEDFYMSWD DLANPLNEQD DPSLFNPDTF FNDDYCPYQQ QPQAPCDDDY  240
INKLLSFNGG NYADVLGDLD ITMQEHRNDH RPTKALTGII VDCSSDNDAK SISATVSMLE  300
PIIINLTCLF QRLVMVKNGS SNALLSSTSW FCYKIPTSEK MTLWTTDTMN PVVIGSQAVV  360
VMIGDERNVL SNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-23	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-23	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-23	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-23	5	151	18	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-23	5	151	18	165	NAC domain-containing protein 19
4dul_B	2e-23	5	151	18	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.15015	1e-156	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607451.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ420439	0.0	KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607451.1	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	1e-111	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A3P6DJY4	0.0	A0A3P6DJY4_BRAOL; Uncharacterized protein
STRING	Bo9g004110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-107	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]