PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607468.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 234aa MW: 26830.8 Da PI: 9.5554

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.4	1e-12	52	88	21	57
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++yps+e+++++++++gLte+qV+ WF+ rR k+k+ XP_013607468.1 52 SHKYPSEEMKAKITEEIGLTEKQVSGWFCHRRLKDKR 88 589********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.5E-5	38	93	IPR001356	Homeobox domain
CDD	cd00086	4.20E-9	51	89	No hit	No description
SuperFamily	SSF46689	1.88E-10	52	96	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-10	52	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-12	52	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.098	53	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAHENVDSRL QHLWPNTLFP LNSDFKIPIF GDSENSGTFK NRSFTVCNPN NSHKYPSEEM 60 KAKITEEIGL TEKQVSGWFC HRRLKDKRSV KEDGNNIGSQ DRSSVVLQDR GSVLRHGSSG 120 STKQTDHWNQ KPRKVESQRL YDDGEVNTSS ERRSSLHKSL VSSRDVESSR YVAHNEHPQA 180 MRNYWFSKPS EYLKVKEGIE NIAITAVKRQ LGRQYREDGR PLAVEFDPLP PGAF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607468.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607468.1	1e-176	PREDICTED: uncharacterized protein LOC106314067
TrEMBL	A0A0D3E085	1e-128	A0A0D3E085_BRAOL; Uncharacterized protein
STRING	Bo9g006410.1	1e-129	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-91	HB-other family protein