PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607494.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 237aa    MW: 27844.4 Da    PI: 8.1726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.43.9e-08157457127
             NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ++fF+++++k +   +++r tk         +k++++ k+ +vg k+tL ++ g++p+  +t+W+m+e  
  XP_013607494.1  15 TIWFFISERTKIK---KRRRETK-------TFTKKIKV-KNGVVGYKTTLNYFVGKQPNRARTNWLMQECW 74 
                     4566666655553...3344444.......33567777.6679*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023657.4E-5272IPR003441NAC domain
SuperFamilySSF1019411.44E-111184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVNYYLSEYK KGNLTIWFFI SERTKIKKRR RETKTFTKKI KVKNGVVGYK TTLNYFVGKQ  60
PNRARTNWLM QECWLESSGH NKTIYLSPTA KKNMKEEDVE ELEEEAVQPR TVENQQPQRQ  120
PQFYPTPTPL LHDIAYHEPQ PPDTVQDQLP QFWAAPLDSY PPRCHDIQYS QPRPLDAIEY  180
QYLYQSGPLT TYENVIESCT QDKSNGDIKK IDMASSKGED QQRSMFKECL NREACVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607494.11e-179PREDICTED: uncharacterized protein LOC106314105
TrEMBLA0A078J2Y31e-52A0A078J2Y3_BRANA; BnaCnng30920D protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-13NAC domain containing protein 64