PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607622.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 127aa MW: 14566.9 Da PI: 7.7897

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.3	1.5e-25	13	112	2	101
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C++C ++ C+++C +a yfp+e +++++++ klFG++n+++++k +++e+ + ++ss++ e+ a+++d ++G +gvi+kl ++++ ++a l++ XP_013607622.1 13 CCVCIEENKICTRKCEFAAYFPNEVQSDYEAATKLFGTTNIISMMKLASHEQNHLLASSILKEGAAWTDDNIRGGYGVIQKLMWEIKLHEAYLSE 107 **********************************************************************************************9 PP DUF260 97 lkeel 101 +k+++ XP_013607622.1 108 RKKKI 112 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.164	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-21	13	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MEALRTDSKR GCCCVCIEEN KICTRKCEFA AYFPNEVQSD YEAATKLFGT TNIISMMKLA 60 SHEQNHLLAS SILKEGAAWT DDNIRGGYGV IQKLMWEIKL HEAYLSERKK KISEEKKQIV 120 LLLNQYI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607622.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607622.1	9e-91	PREDICTED: LOB domain-containing protein 5-like
Swissprot	Q9C8V8	2e-38	LBD5_ARATH; LOB domain-containing protein 5
TrEMBL	A0A078JEG2	9e-89	A0A078JEG2_BRANA; BnaUnng01320D protein
STRING	Bo9g027690.1	2e-56	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	8e-41	LOB domain-containing protein 5