PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607713.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25760.5 Da    PI: 5.0113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.2e-121149138
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                    k+ie+k  r+vtf+kRr g++ KA+ L+ L  ++++a++
  XP_013607713.1 11 KFIEDKAVRSVTFCKRRDGLFSKASDLCLLSpATQIAIL 49
                    79****************************835577766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.325351IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-11364IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-14477IPR002100Transcription factor, MADS-box
CDDcd002668.50E-22580No hitNo description
PRINTSPR004043.4E-8525IPR002100Transcription factor, MADS-box
PfamPF003195.2E-111254IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGGEKRKIDI KFIEDKAVRS VTFCKRRDGL FSKASDLCLL SPATQIAILA TPPSTNSHAG  60
FYSFGHSSVD YVVSSLLHDQ SPGDPTNQVE NRRLGFWWED QALERLESVD ELRDATDAVT  120
RMLNNVRLRL DAVKGNQRGG ALVIHQEEAR APKIRNTNKE KTNQITNSES ACGLVIHQDE  180
VPQLCNTNTN YKNEETTTQV ANSEGASGSG SSVEKNDDIL HIDDLDIDDF FH
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607713.11e-174PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6336e-38AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A0D3E5611e-173A0A0D3E561_BRAOL; Uncharacterized protein
STRINGBo9g043470.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.19e-79AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]