PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608112.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 224aa    MW: 25339.9 Da    PI: 4.9904
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.72.6e-07125104128
             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     ktL f+ grapkg+ t+W+mhey +
  XP_013608112.1   1 KTLLFHIGRAPKGQITEWLMHEYCM 25 
                     79*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-9147IPR003441NAC domain
PROSITE profilePS5100515.509148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
KTLLFHIGRA PKGQITEWLM HEYCMKGGVF MVHYSEEDAL VVCRLRRNRE FRTCTSQKAP  60
PEPNLAADKH MILQNGAASS GSPFDWDRHV DFYLAGESGD NHLTETPENL QVETGEDFYG  120
DILRDDIINL DEVVMTGKTP NEVPTLESAS MAIRILPLPN MIDRQMASFL EERPSQEKKG  180
KGISGTEPLS SCFMGVYSIK WVNRARWDVI IGVVGLIVML FYQE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608112.11e-169PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 89, partial
SwissprotQ94F581e-109NAC89_ARATH; NAC domain-containing protein 89
TrEMBLM4CDX21e-143M4CDX2_BRARP; Uncharacterized protein
STRINGBra002403.1-P1e-144(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.11e-104NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]