PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608170.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 126aa    MW: 14244 Da    PI: 11.1883
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.24.8e-253790155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    +pr  Wtp+LH+rF++a e+  G+++AtPk+i e+m+v+gLt+  v+SHLQkYR 
  XP_013608170.1 37 RPRNIWTPQLHQRFLDAFEHH-GINHATPKRITEFMNVDGLTRGSVASHLQKYRY 90
                    5899*****************.9*******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4053293IPR017930Myb domain
SuperFamilySSF466892.13E-203494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-253695IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-223890IPR006447Myb domain, plants
PfamPF002496.7E-84189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MPSQLQLPSS QANSSAEFAE NSADRGSGDE PARTLRRPRN IWTPQLHQRF LDAFEHHGIN  60
HATPKRITEF MNVDGLTRGS VASHLQKYRY QLKRIERREP FASFLVGKIK PSPSPSPSPS  120
PLQSRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-223793157Transcription factor LUX
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894319e-97AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608170.13e-88PREDICTED: transcription factor LUX-like
SwissprotO222103e-26MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0D3EB034e-86A0A0D3EB03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E9S64e-86A0A3P6E9S6_BRAOL; Uncharacterized protein
STRINGBo9g117350.16e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15903712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-31G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]