PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608283.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 227aa    MW: 26441.9 Da    PI: 5.4755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.92.8e-21101554128
             NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgk 88 
                     G++F+P d+el++eyL +k+egk+ ++   i+  d+y+ ePw L++ + +  +++ewy+ ++r + ++     g++++r +t+   sg Wka  k
  XP_013608283.1  10 GIQFQPYDDELINEYLIPKLEGKPRRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYLVTRTQLAKknigCGQKAKRkITRdddSGSWKANSK 101
                     99**********************766...9999**********86444444889****9999876663444477777745556779******99 PP

             NAM  89 dkevlskkgelvglkktLvfy.......kgrapkge.........ktdWvmheyrl 128
                     d    ++k+ ++g k+tL+f        k  +++g          + +W+m ey l
  XP_013608283.1 102 DDITDNEKKMVIGEKQTLAFVkskvnnkK--QKSGDgtscnvsrdSESWIMTEYML 155
                     87777778999**********66555331..2222233444444467899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.627173IPR003441NAC domain
SuperFamilySSF1019413.92E-239171IPR003441NAC domain
PfamPF023657.2E-1510154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MYEYNDEDGG IQFQPYDDEL INEYLIPKLE GKPRREITMK DVYSKEPWLL DHPMGSFFKK  60
NEWYYLVTRT QLAKKNIGCG QKAKRKITRD DDSGSWKANS KDDITDNEKK MVIGEKQTLA  120
FVKSKVNNKK QKSGDGTSCN VSRDSESWIM TEYMLPEEKD KFHELVICKI HVIKNSKKKD  180
DDHNEALNVS SLPMEEDDGI LNYDAQFIYQ DLLESVCYPP PPPPRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608283.11e-169PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A0D3ECL51e-134A0A0D3ECL5_BRAOL; Uncharacterized protein
STRINGBo9g135840.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-15NAC domain containing protein 35