PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608341.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 139aa MW: 15636.5 Da PI: 5.4783

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.7	6.9e-16	21	105	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk l ++sg +++p f+++h +g k+++kt +l++ s ++Wev + + +lt+GWk+F a++L+ gD v+Fk++g++ f + XP_013608341.1 21 FFKPL--LPGFQSG-VTIPLAFFSKHiEG-KTNQKTWKLRSdASDQTWEVIQ--EDR----TLTRGWKDFTTAHDLQIGDLVIFKHEGDMVF--H 103 66666..6667776.9********654.467789997889**99..444....4*********************9999998..7 PP EE CS B3 94 vk 95 v+ XP_013608341.1 104 VT 105 66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-21	13	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-20	16	116	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.632	18	110	IPR003340	B3 DNA binding domain
CDD	cd10017	1.02E-16	19	107	No hit	No description
SMART	SM01019	3.3E-18	21	110	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-11	29	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MVNGGLRASA TEMANPHEPH FFKPLLPGFQ SGVTIPLAFF SKHIEGKTNQ KTWKLRSDAS 60 DQTWEVIQED RTLTRGWKDF TTAHDLQIGD LVIFKHEGDM VFHVTPFGPS CCEIQYTHPH 120 IIKEEADAGD ADDNEISKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608341.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189464	1e-170	AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608341.1	1e-101	PREDICTED: B3 domain-containing protein REM9-like
Swissprot	O81778	2e-44	REM9_ARATH; B3 domain-containing protein REM9
TrEMBL	A0A0D3DQY2	2e-92	A0A0D3DQY2_BRAOL; Uncharacterized protein
STRING	Bo8g071450.1	4e-93	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	2e-46	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Wang S, et al. Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006027 [PMID:27138552]