PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608476.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 199aa MW: 23190.6 Da PI: 9.2951

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.7	1.7e-47	15	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeel+++yLk+kv+gk++++ ++i+ev++yk+eP+dL +++k++++ewyfF++ +k++++++ nratk+gyWk+tg+dk++++ XP_013608476.1 15 APGFRFHPTDEELITYYLKRKVQGKPMRF-DAIREVNVYKHEPSDLAelSRLKTKDQEWYFFCPLEKRQNSSTVINRATKKGYWKKTGEDKQIKR 108 69***********************99.99**********8444899999**********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+ ktLvf++gr+pkg++t+Wv+ eyrl XP_013608476.1 109 GgDDKVIGVVKTLVFHRGRSPKGNRTNWVIYEYRL 143 877788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-52	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	50.636	14	161	IPR003441	NAC domain
Pfam	PF02365	4.8E-27	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MADNDDAWAV MKPIAPGFRF HPTDEELITY YLKRKVQGKP MRFDAIREVN VYKHEPSDLA 60 ELSRLKTKDQ EWYFFCPLEK RQNSSTVINR ATKKGYWKKT GEDKQIKRGG DDKVIGVVKT 120 LVFHRGRSPK GNRTNWVIYE YRLVLKKLEI DSYVLCRVIR KEHAGPSTAC IYAPFSEQDW 180 DDDGGINEKI QQVCPCTQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-37	14	163	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269\|PubMed:25578968}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608476.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608476.1	1e-149	PREDICTED: NAC domain-containing protein 78-like
Swissprot	Q9SQX9	1e-72	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A078J8D9	1e-140	A0A078J8D9_BRANA; BnaCnng38230D protein
STRING	Bra008980.1-P	1e-119	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23481	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	2e-75	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]