PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608492.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 223aa    MW: 25323.2 Da    PI: 5.5841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-09129170854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r+RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_013608492.1 129 AARQRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 170
                     569******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14127180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6130170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-6144175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNNNNMNPSL DQNYTWNNII MNNKNDHHHN DPIDMAMNQH TQLHIFNPFT SSSSSFHFPP  60
LSSSLTTTTF FSGDQEEEED EEEPVEELSA MKEMMYKIAA MQPVDIDPAT VKKPKRHNVR  120
ISDDPQSVAA RQRRERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP  180
PPPQDQASQV VTTSWVSQPP PPDFGGGGGG DWYKSGENSI NSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608492.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207521e-126AB020752.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH16.
GenBankAL3539941e-126AL353994.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project).
GenBankCP0026881e-126CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608492.11e-167PREDICTED: transcription factor HEC3-like
SwissprotQ9LXD88e-84HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A0D3EGP11e-165A0A0D3EGP1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DRR51e-165A0A3P6DRR5_BRAOL; Uncharacterized protein
STRINGBo9g173860.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]