PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608508.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29050.2 Da    PI: 5.77
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.55.5e-111160351
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeyss 51
                    ie+  +r++   kR +g++K AeEL +L d+++++  f  + gkl  ++s
  XP_013608508.1 11 IEDRKKRNIACQKRMKGLMKMAEELTILSDTKACLTFFNRDeGKLVAWPS 60
                    99**********************************99864389999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.213149IPR002100Transcription factor, MADS-box
CDDcd002662.81E-22285No hitNo description
SuperFamilySSF554557.46E-17393IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121158IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MARPKLKLAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DEGKLVAWPS  60
QEEAESLIER FYALPENQRN MNADDQESYI KTITKKIEKK LEHSRKVVEE LEMDHLMLQI  120
QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI IPKATGVAVA  180
PEWGPGPCFR PMRRGGVYLM DKWFVENPEV QKHGDGMTHM GSRFNLNMEP SNDDEEYMKT  240
KDGESSKSGG ADNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215RPKLKLAWIEDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608508.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D3EHB60.0A0A0D3EHB6_BRAOL; Uncharacterized protein
STRINGBo9g176110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-57AGAMOUS-like 96