PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608630.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 489aa MW: 54700.1 Da PI: 6.4703

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+ XP_013608630.1 21 KKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKR 76 899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-20	5	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.04E-17	19	84	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	8.47E-18	21	77	No hit	No description
Pfam	PF00046	1.6E-16	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MLSDSGEMPA DGDKHSAENS KKRKLKTPMQ VMALENFYNE HKYPSEEMKA KIAEEIGLTE 60 KQVSGWFCHR RLKDKRSVKE DGNNIGSQDR SSVVLQDRGS VLRQDSCGST KQTDYWNPKA 120 REVESQRLYD DDGEDSTSSE RRSSLHKNLV SSKDVESSRY VGRSEHHPQA MRSHGASKPS 180 GYLKVKGDSE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNN VIVQEPIYVG 240 NQRRSQPPYF TGTRKSFVPG PSYEPARKPK MLSSDPYSSE EEEEDDDDDD DDDDDMMGGM 300 EPGLGDKQSL REPSFKSPSL SYSNTVPDRK GPPQGVPLTN SKKSHISSKG RAEGSRNNLI 360 DNFHNLSGTS QTHDYDKSIL NGGRKTGYLT KSSNMLPLSG SRSSDSMERD TSSGMVGKYH 420 GEKINHMKMH REKLHSTGEP LVTKRLKHGY PQQVYSETFE RKDQINRSGV ELPSSFNGDE 480 TEESSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MLSDSGEMPA DGDKHSAENS KKRKLKTPMQ VMALENFYNE HKYPSEEMKA KIAEEIGLTE  60
KQVSGWFCHR RLKDKRSVKE DGNNIGSQDR SSVVLQDRGS VLRQDSCGST KQTDYWNPKA  120
REVESQRLYD DDGEDSTSSE RRSSLHKNLV SSKDVESSRY VGRSEHHPQA MRSHGASKPS  180
GYLKVKGDSE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNN VIVQEPIYVG  240
NQRRSQPPYF TGTRKSFVPG PSYEPARKPK MLSSDPYSSE EEEEDDDDDD DDDDDMMGGM  300
EPGLGDKQSL REPSFKSPSL SYSNTVPDRK GPPQGVPLTN SKKSHISSKG RAEGSRNNLI  360
DNFHNLSGTS QTHDYDKSIL NGGRKTGYLT KSSNMLPLSG SRSSDSMERD TSSGMVGKYH  420
GEKINHMKMH REKLHSTGEP LVTKRLKHGY PQQVYSETFE RKDQINRSGV ELPSSFNGDE  480
TEESSSSMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608630.1	0.0	PREDICTED: uncharacterized protein LOC106315448
TrEMBL	A0A0D3E089	0.0	A0A0D3E089_BRAOL; Uncharacterized protein
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein