PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608925.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 220aa    MW: 24518.8 Da    PI: 6.518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1853102255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  XP_013608925.1  53 IYRGVRQRN-SGKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAALALRG 102
                     69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.72E-3252112No hitNo description
PfamPF008473.1E-1452102IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2153112IPR016177DNA-binding domain
PROSITE profilePS5103222.24753110IPR001471AP2/ERF domain
SMARTSM003806.8E-3153116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3253112IPR001471AP2/ERF domain
PRINTSPR003678.2E-95465IPR001471AP2/ERF domain
PRINTSPR003678.2E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDPFYTSFSD SFLSIPDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR  60
NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL RGRSACLNFA DSAWRLRIPE  120
STCPKEIQRA AAEAAMAFQN KTATTETTMV EAVKPAEETV GQTGGETMEE NGVFYMAEEA  180
VLGMPRFLEN MGEEMLLPPP ELGWNHNDLA GDADVSLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608925.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2084020.0DQ208402.1 Brassica juncea DREB1-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608925.11e-164PREDICTED: dehydration-responsive element-binding protein 1D
RefseqXP_013647011.11e-164dehydration-responsive element-binding protein 1D
RefseqXP_022568277.11e-164dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ931e-126DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A078GZP61e-163A0A078GZP6_BRANA; BnaC09g28190D protein
TrEMBLA0A0D3EA851e-163A0A0D3EA85_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DJY81e-163A0A3P6DJY8_BRAOL; Uncharacterized protein
STRINGBo9g104770.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-109C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]