PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608962.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 394aa    MW: 43281.1 Da    PI: 6.5618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000512703051555
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  XP_013608962.1 270 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 305
                     5566788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-5265309No hitNo description
SuperFamilySSF474595.63E-10265317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-7270312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNRGVLESSP VQQLMAPGNP NWWNASGSMR PPQPLMGHQH GPLPPQMTPN NYVRPQMMPT  60
LLPPFMPYPA TSSSSSSSPS LPNNPNLSSW LESNDLPPES WSLSQLLLGG LMMGEDERLE  120
MMNHHNHHVE QQHHNFQGKM GLENWEEQVL SHQQASMGVD DIKQESNINN SNGYLTPSPN  180
SPPNKSCVST ITTTSLNSND DNNNNNNNNN SSMLDFSSIH NGLNLSEGRH IPPDRSSECN  240
SLEIGGSTNK KPRLQPSPSS QSTLKVRKEK LGGRIAALHQ LVSPFGKTDT ASVLSEAIGY  300
IRFLQSQIEA LSHPYFGTTA SGNMRHQQLL LNDQCMKRRE ASFSSTETQN ANEEPKKDLR  360
SRGLCLVPIS CTLQVGSDNG ADYWAPALGS AGFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886340.0AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBankBT0001210.0BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608962.10.0PREDICTED: transcription factor bHLH68-like isoform X2
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLM4D3M90.0M4D3M9_BRARP; Uncharacterized protein
STRINGBra011083.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]