PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013609384.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 188aa MW: 21580.8 Da PI: 4.5356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013609384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.2e-33	3	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L+++++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r+t++gyW++ g d++v+++ XP_013609384.1 3 LPPGFRFFPTDEELVVHFLHRRASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWESMGIDEPVFTS 88 79***********************999.99***********87778899*9975........5799************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk L+fy g++++ +Wvm+ey+l XP_013609384.1 89 sTHKRVGIKKYLTFYLGDSQS----NWVMQEYSL 118 67778******887755....9****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-43	1	156	IPR003441	NAC domain
PROSITE profile	PS51005	41.67	3	156	IPR003441	NAC domain
Pfam	PF02365	8.2E-22	4	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LHRRASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60 FYSRKTQERV TSNGYWESMG IDEPVFTSST HKRVGIKKYL TFYLGDSQSN WVMQEYSLPD 120 SSSSSGRSSK RSSRGSTSSS HKPDYSKWVI CRVYEQNSSE EEDDDGAELS CLDEVFLSLD 180 DLDEVSLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_B	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_C	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_D	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_A	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_B	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_C	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_D	1e-36	1	162	18	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013609384.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966746	0.0	KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609384.1	1e-137	PREDICTED: NAC transcription factor 25-like
Refseq	XP_013652771.1	1e-137	NAC domain-containing protein 104-like
Refseq	XP_013699426.1	1e-137	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-115	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D3E263	1e-136	A0A0D3E263_BRAOL; Uncharacterized protein
STRING	Bo9g018140.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-98	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]