PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609500.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 287aa    MW: 32434.6 Da    PI: 6.7032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.4e-3344152199
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+ltpsdv+k++rlv+pk++ae++          + ++e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++
  XP_013609500.1  44 FEKTLTPSDVGKLNRLVIPKQHAEKYfplnaisnnaDASTEKGMLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRQ 138
                     99********************************9988889****************************************************99 PP

                     SSSEE..EEEEE-S CS
              B3  86 grsefelvvkvfrk 99 
                     +++ ++l+++++r+
  XP_013609500.1 139 RSDPRRLFIGWRRR 152
                     889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4038159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-3139152IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-2843141No hitNo description
SMARTSM010193.8E-2444153IPR003340B3 DNA binding domain
PROSITE profilePS5086314.08544153IPR003340B3 DNA binding domain
PfamPF023626.7E-3144152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSVNHYSTDH HHNHTLFWQQ LHTTDATETT TATWLNQDQK ESLFEKTLTP SDVGKLNRLV  60
IPKQHAEKYF PLNAISNNAD ASTEKGMLLS FEDELGKCWR FRYSYWNSSQ SYVLTKGWSR  120
FVKDKQLDPG DVVFFQRQRS DPRRLFIGWR RRGQGSSSAV ANPTSYSSSM VDAPPYLQVH  180
ASSNYSNPPS HSEYSHYGAA VATASETHSI PSSSAVGSSR TVRLFGVNLE CQMDEDDGDD  240
SVAAPNATEC PDGYYGQNMY YYYTPHPHNM NIAFTGDTMK QLGDRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-50401524113B3 domain-containing transcription factor NGA1
5os9_B8e-50401524113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609500.10.0PREDICTED: B3 domain-containing protein At5g06250
RefseqXP_013680961.10.0B3 domain-containing protein At5g06250-like
RefseqXP_022569292.10.0B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-137Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D3EHF20.0A0A0D3EHF2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DSH80.0A0A3P6DSH8_BRAOL; Uncharacterized protein
STRINGBo9g176470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-138B3 family protein