PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609604.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 253aa    MW: 28911.9 Da    PI: 10.236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31561791128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp G+rFhPtd+el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++eek+ yfFsk++++ +  +r + +  +gyWk  gk++e+++ 
  XP_013609604.1  56 LPIGYRFHPTDQELILHYLLPKAFASPLPS-SIIPVFDVFFSHPLTFPG--DQEEKKRYFFSKKRREVS--SRIKISSGDGYWKPIGKEREIIA- 144
                     699*************************99.88***************3..4577899******99875..68888889***************. PP

             NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                      g++vg+++tL+f++    ++k +kt+W m ey l
  XP_013609604.1 145 CGRTVGIRRTLAFHETnkASSKLNKTRWNMTEYCL 179
                     999***********6511445567*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-3749198IPR003441NAC domain
PROSITE profilePS5100537.42156200IPR003441NAC domain
PfamPF023654.2E-1957179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSFSLQSPQN KTLHKSSFSP SLSFAPRAFS LEKQYWKKRE DMEVEKRTMV NRSMKLPIGY  60
RFHPTDQELI LHYLLPKAFA SPLPSSIIPV FDVFFSHPLT FPGDQEEKKR YFFSKKRREV  120
SSRIKISSGD GYWKPIGKER EIIACGRTVG IRRTLAFHET NKASSKLNKT RWNMTEYCLA  180
GFASTKQVSG EWAVYNVHER KASKGKRQRK SRGRDDAEEE NLSCIDFTIG SDHETGPPPP  240
SPPTSADESG SII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-195417913140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208KGKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609604.10.0PREDICTED: NAC domain-containing protein 83-like isoform X1
TrEMBLA0A0D3EFM61e-179A0A0D3EFM6_BRAOL; Uncharacterized protein
STRINGBo9g166250.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-106NAC domain containing protein 84