PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609710.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 294aa    MW: 33800.1 Da    PI: 9.2663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1718981599
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      v+p  f+ ++ ++k  + ++ l de gr W+v+ + + + g +v++kGW++F++++ L+ gDf+vF++dg s+f   vk+f+k
  XP_013609710.1 18 FKVIPPAFV-NI-LEKLLPNQVGLLDEIGRLWKVETKTEEGVGDVVFKKGWEKFANDHSLEFGDFLVFSYDGVSRF--SVKIFDK 98
                    459999999.44.55678889***************99999999***************************99999..*****98 PP
2B335.41.8e-111942771598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                     ++ +p +f++++g++ ee+    l de+g++W +k+ +  +++r+   + W +F+++++L +   ++F+++  ++ ++ + +v++fr
  XP_013609710.1 194 QMEIPTTFLKSNGIEMEEN--FELCDENGKKWPMKVVIHDRGQRF-SPGLWLSFCRSHKLSTSNKCLFEFIvrSDgTCNQVLVRIFR 277
                     689*********9998886..6666***********776666665.5668*******************773244455566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.52E-161597No hitNo description
Gene3DG3DSA:2.40.330.108.5E-1915101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1917103IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-91799IPR003340B3 DNA binding domain
PfamPF023628.1E-161999IPR003340B3 DNA binding domain
PROSITE profilePS5086313.5922099IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-16177274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-16177277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8180279IPR003340B3 DNA binding domain
CDDcd100178.72E-10182277No hitNo description
SMARTSM010191.2E-7184279IPR003340B3 DNA binding domain
PfamPF023626.2E-10194277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVERSEKGSY ARKDTEFFKV IPPAFVNILE KLLPNQVGLL DEIGRLWKVE TKTEEGVGDV  60
VFKKGWEKFA NDHSLEFGDF LVFSYDGVSR FSVKIFDKNG CKKYLVAVTT ADRSRVAVEK  120
EPVLVKPVDD ISTKRCGKSR KRVSVKEEPS GNRVIHPCEM GCVPENKKHK GFEEPVYKPK  180
NPHFVRNITD CFRQMEIPTT FLKSNGIEME ENFELCDENG KKWPMKVVIH DRGQRFSPGL  240
WLSFCRSHKL STSNKCLFEF IVRSDGTCNQ VLVRIFRGRM LNTVTINSYQ VLAM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609710.10.0PREDICTED: putative B3 domain-containing protein At5g66980 isoform X2
SwissprotQ9FGD21e-102Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A0D3E2J70.0A0A0D3E2J7_BRAOL; Uncharacterized protein
STRINGBo9g020470.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-105B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]