PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609786.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 224aa    MW: 24496.6 Da    PI: 6.3886
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.3e-39111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ae+ +++fa+vhk+FGasn +kll  +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+q+++l++el
  XP_013609786.1  11 PCGACKFLRRKCVAECIFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQVMSLQEEL 105
                     7*********************999879******************************************************************* PP

          DUF260  95 allkee 100
                     a++k++
  XP_013609786.1 106 AVVKTH 111
                     *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.84810112IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI  60
PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLTTLERFPP  120
QPKQQNNSQA EAASSTKAPL IATADHKNNN VSSSLLHIYG MSQEQQQQQQ QPQEGTEVPN  180
ESVDFSTLLG LEDPLDRDGD LNTLAREFVS KYLTDGKYRS CSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3841124111LOB family transfactor Ramosa2.1
5ly0_B2e-3841124111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609786.11e-168PREDICTED: LOB domain-containing protein 31
SwissprotO813221e-104LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0D3DZK71e-166A0A0D3DZK7_BRAOL; Uncharacterized protein
STRINGBo9g002150.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-96LOB domain-containing protein 31