PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013609849.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 243aa MW: 28305.9 Da PI: 6.5409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013609849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.4e-06	85	121	1	39
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKls 39 r+r h + Er RR + ++++ L +llP a +++ K+s XP_013609849.1 85 RCRQHMMKERTRRMKQKQSYLALHSLLPFA--TKNDKNS 121 6889*************************8..5888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.52E-7	78	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.42E-5	82	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDTFFLDSIW EEEDIFWDLI AGDVSGNADN TVSVLNRSAF RSYVRDTEQT MVSSSSSVNV 60 NKRMLNLLRK IWEENKNALA PEKERCRQHM MKERTRRMKQ KQSYLALHSL LPFATKNDKN 120 SXKAVDQIGK LDEYKKELER RMNVLEAKSA TDHDKMTGTK IRFSLQEPLS GIDSMVEILQ 180 CLKSMGTKLK TVQANFSPHE FSATMNIETQ IRGEEVEERV ERRLQETEWK LLVLPEASRI 240 EDY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013609849.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609849.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH92-like
Swissprot	Q9FIX5	1e-117	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A3P6E786	1e-154	A0A3P6E786_BRAOL; Uncharacterized protein
STRING	Bra027501.1-P	1e-154	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-106	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]