PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609939.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 188aa    MW: 21991.4 Da    PI: 8.5955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-132575254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +++h e+Er+RR+++ s ++ Lr+llP+ +   + K s ++ + +A +YI +L
  XP_013609939.1 25 KMMHREIERQRRQEMASLYASLRSLLPHHF--IQSKRSTSDQVNEAANYITYL 75
                    789*************************65..9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.632375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-102575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.89E-92580No hitNo description
Gene3DG3DSA:4.10.280.108.4E-112590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-142591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-62981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDDCRERRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYASLRSLL PHHFIQSKRS  60
TSDQVNEAAN YITYLHKKIK ELSSKRDELM LLSRGSFSDD SKDEMKMMNH VVVRHCLAGL  120
EIVFSSRCCG GQPRLSSVLQ VLSENGLCLL NAIYSIVDDR VIYTIQAEVN DMTLIDFRKL  180
EESLIRMK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609939.11e-136PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI11e-84BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A078J6F21e-134A0A078J6F2_BRANA; BnaC09g52800D protein
TrEMBLA0A0D3EA631e-134A0A0D3EA63_BRAOL; Uncharacterized protein
STRINGBo9g103560.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-87bHLH family protein