PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610017.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 201aa    MW: 22167.1 Da    PI: 7.9435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-1989123135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C t++TplWR+gp g+k+LCnaCG++++k+++
  XP_013610017.1  89 CASCDTSSTPLWRNGPKGPKSLCNACGIRFKKEEK 123
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2783119IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-1883135IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-1383124No hitNo description
Gene3DG3DSA:3.30.50.106.7E-1787123IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.55E-1388120No hitNo description
PROSITE patternPS00344089114IPR000679Zinc finger, GATA-type
PfamPF003203.7E-1789123IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMGYQTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDKHR RFSSANSNNI  60
SGDFFFHGGS AKTTSYKKSG SEHNLPRRCA SCDTSSTPLW RNGPKGPKSL CNACGIRFKK  120
EEKRAAARNS ITSGGGSSVA EVPAENPYNG GGNYYTHHHH ASSSPSWAHQ NTQRVQYFSP  180
APEMEYPFVD DVTAASFMSW N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610017.11e-150PREDICTED: GATA transcription factor 20
RefseqXP_013651465.11e-150GATA transcription factor 20
SwissprotQ9ZPX01e-108GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078IMK81e-149A0A078IMK8_BRANA; BnaC09g09760D protein
TrEMBLA0A0D3E3A51e-149A0A0D3E3A5_BRAOL; Uncharacterized protein
STRINGBo9g026020.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-101GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]