PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610063.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22801.2 Da    PI: 9.9627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + r+vtfskRrng+lKKA+ELSvLCda+v++i+fs++g+lye+ss
  XP_013610063.1  9 KKIENATSRKVTFSKRRNGLLKKAYELSVLCDAQVSLIVFSQRGRLYEFSS 59
                    68***********************************************96 PP
2K-box66.11.3e-2278170597
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++++ +e   ++l+qe++ + ++ie L+  +R+llG++L+s+sl eLq++ +qL++sl ++R++K ++++eq+e+++ kek+l een +L++k
  XP_013610063.1  78 TSNQYSEIYIQQLKQEASHMIAKIELLEFHKRKLLGQELSSCSLPELQEIDSQLQRSLGEVRARKAQMFKEQLEKQKAKEKQLLEENVQLHQK 170
                     4555788889******************999************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-33384IPR002100Transcription factor, MADS-box
CDDcd002651.29E-41378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.8687186IPR002487Transcription factor, K-box
PfamPF014861.2E-2188170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVRGKIEMKK IENATSRKVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSSS  60
DMQNTIERYH TYRNDHETSN QYSEIYIQQL KQEASHMIAK IELLEFHKRK LLGQELSSCS  120
LPELQEIDSQ LQRSLGEVRA RKAQMFKEQL EKQKAKEKQL LEENVQLHQK NVIDPWRGSI  180
DQQKKFRVID LNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-20178178Myocyte-specific enhancer factor 2B
1tqe_Q5e-20178178Myocyte-specific enhancer factor 2B
1tqe_R5e-20178178Myocyte-specific enhancer factor 2B
1tqe_S5e-20178178Myocyte-specific enhancer factor 2B
6c9l_A5e-20178178Myocyte-specific enhancer factor 2B
6c9l_B5e-20178178Myocyte-specific enhancer factor 2B
6c9l_C5e-20178178Myocyte-specific enhancer factor 2B
6c9l_D5e-20178178Myocyte-specific enhancer factor 2B
6c9l_E5e-20178178Myocyte-specific enhancer factor 2B
6c9l_F5e-20178178Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0542200.0AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0652060.0AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY0660350.0AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0965090.0AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY1412130.0AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610063.11e-140PREDICTED: MADS-box protein SOC1-like
RefseqXP_013610064.11e-140PREDICTED: MADS-box protein SOC1-like
SwissprotQ9FIS11e-114AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D3E1T01e-138A0A0D3E1T0_BRAOL; Uncharacterized protein
STRINGBo9g014830.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-104AGAMOUS-like 42