PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610161.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 193aa    MW: 22624.2 Da    PI: 4.4124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41e-30171381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+P de+lv eyL+kkv + ++++   ++e++ ++v+PwdL      +++e+y+F+k+++ +    +k r t sgyW++  + +ev+++
  XP_013610161.1  17 LPPGFRFDPDDEDLVFEYLAKKVLHGPMDF--DLPELRSCNVDPWDLL---GDKNTEMYYFVKKEEIE----KKGRETLSGYWEECEE-EEVMES 101
                     79*************************999..49*************6...55778*******99876....6789999*****8866.667776 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l g kkt++fy g++p+g+ t W+m e+rl
  XP_013610161.1 102 gdrgCNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 138
                     57666677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-336166IPR003441NAC domain
PROSITE profilePS5100532.43417167IPR003441NAC domain
PfamPF023658.1E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HGPMDFDLPE LRSCNVDPWD  60
LLGDKNTEMY YFVKKEEIEK KGRETLSGYW EECEEEEVME SGDRGCNHLE GRKKTFAFYI  120
GKRPRGTITP WIMYEFRLLS SRATRWSSSS LPRGAVENWR AVKVIVKEEN EEEIEEEEQA  180
SDESDGEEVV QSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-181513915143NO APICAL MERISTEM PROTEIN
1ut4_B5e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_A5e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_B5e-181513915143NO APICAL MERISTEM PROTEIN
4dul_A5e-181513915143NAC domain-containing protein 19
4dul_B5e-181513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610161.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747650.0KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610161.11e-141PREDICTED: NAC domain-containing protein 41
RefseqXP_013659277.11e-141NAC domain-containing protein 41-like
RefseqXP_013680453.11e-141NAC domain-containing protein 41-like
RefseqXP_022569947.11e-141NAC domain-containing protein 41-like
TrEMBLA0A0D3E9S11e-139A0A0D3E9S1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E8161e-139A0A3P6E816_BRAOL; Uncharacterized protein
STRINGBo9g097190.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.12e-89NAC domain containing protein 97