PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610255.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 361aa    MW: 39465.8 Da    PI: 8.1411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12182224855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r ++RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_013610255.1 182 RRQKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 224
                     569*******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.265174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-13182228No hitNo description
SuperFamilySSF474591.7E-14184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-14184230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSQRVPYCHI DETPAATVGS TKAAYIPMLD YEVAELTWEN GQLGWNSLGP TQVPASSKNL  60
RSAGGTLESI VDQATRFPNP KPTDELVPWF HHRSSRAGLD ALVPEQQSQP ATHVGSCSNG  120
HPMAGGKRAR VASEWSTGGS QNLTFETYGF TSTSLDDNSS SGGKPCTKTT TVYEHDPVCH  180
SRRQKRRDKI NQRMKTLQKL VPNSSKTDKA SMLDEVIEYL KQLQAQVSMM CRMNLPSMML  240
PMAMQQQQQL QLSLMSGSMG LGLGMGMTGL GLLGLNSMNR AAATAPNIHT NMMPNPFVPM  300
TSLSWDASSS TDTLFQSPLT HDPMPAFLSC SSQQTTMEAY SRMAALYQQM QQQIPPPSNP  360
K
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610255.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610255.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-146UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A3P5XT610.0A0A3P5XT61_BRACM; Uncharacterized protein
STRINGBo9g001070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-144bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]