PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610461.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 309aa MW: 34353 Da PI: 7.9697

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.1	2.1e-15	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ XP_013610461.1 85 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136 799*************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.07E-14	83	139	No hit	No description
SuperFamily	SSF47459	1.44E-16	83	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.739	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-12	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-14	86	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MTREALSSNG LLNFVLSETL SATSFKSLVV LEPPPENDII IAKNTVPVIS HQEPSSRQLP 60 PASRGKKRKR RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSVLRSL MPQPFAQKGD 120 QASIVGGAID FIKELEQQLL SLEAQKLHKA QTNQTATSST SQDSDGEREN ARQPCSLSLS 180 HFFLHSYDPN QENRNGTTSS VRTAMEDLEV TLIETHANIK ILSRRRGFRW TTVATTGPPQ 240 LLKLMAALHS VSLSVVHLSV TTLDTFAIYS ISTKVEDSCP LSSVDDIAGA VHHMLSIIEE 300 EPFCCSLVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	KKRKRR
2	65	71	KKRKRRK
3	65	72	KKRKRRKP
4	66	71	KRKRRK
5	67	73	RKRRKPR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610461.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353555	0.0	AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610461.1	0.0	PREDICTED: transcription factor bHLH71
Swissprot	Q56XR0	1e-160	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A0D3E6X6	0.0	A0A0D3E6X6_BRAOL; Uncharacterized protein
STRING	Bo9g065460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-126	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]