PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610489.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 315aa    MW: 33445.2 Da    PI: 5.9867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11123168555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  XP_013610489.1 123 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 168
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11116172No hitNo description
PROSITE profilePS5088817.028118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16120175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MREREAKKED KTEEMENGNG EGKGEFINQN NNDYFLDSMS MLSSLPPCWD SSLPPPHPPP  60
PQSLLHALTV DTSFPDQFHH PQESGGPSQD GLQAQGTVST TSAPVARQKP RVRARRGQAT  120
DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSVSRLG  180
GARAAGGPGF NGLTSEAGGR LNALSGPSNG VNGKGNGTGS SSESLRSTEQ RVAKLMEEDM  240
GSAMQYLQGK GLCLMPISLA TAISSTSNHS RGALFNPSSN VVAAEEANVA VASASAAAAP  300
EASTSMEDDV SASKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610489.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610489.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-173BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A397XTB70.0A0A397XTB7_BRACM; Uncharacterized protein
STRINGBo9g133640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-117LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]