PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610621.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 247aa    MW: 26763.9 Da    PI: 10.2756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1663148186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  e++ +l+rg+lk+++Weev++++      ++  ++ +qCk++++ ++k+yk++k ++++    sss++++fd+l+
  XP_013610621.1  63 CWSEKATGVLIDAWGEIHLELSRGNLKQKHWEEVAERVrskeDNGKAPKTDVQCKNRIDTVKKKYKQEKLTSGG----SSSSWVFFDKLD 148
                     7*************************************8887778899*********************99998....5778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2561150No hitNo description
Gene3DG3DSA:3.40.50.6208.7E-463120IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MADDEDQIRS HSDSPDPSSS PPPSGKLTVT VASPAPSQKD PDAPPLAPLP IKSSGGGGGR  60
EDCWSEKATG VLIDAWGEIH LELSRGNLKQ KHWEEVAERV RSKEDNGKAP KTDVQCKNRI  120
DTVKKKYKQE KLTSGGSSSS WVFFDKLDRL IGSTAKISSG GSRGLNLYHQ QGKAETPRFG  180
GKARVTSASF KRLPLRRKRN VSDSDSVFEA GVSEDSGDSL PPPPLSKKKQ GGGNKWRELS  240
RAIMRFG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610621.11e-179PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG89e-88ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D3ADS01e-178A0A0D3ADS0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GET31e-178A0A3P6GET3_BRAOL; Uncharacterized protein
STRINGBo1g134590.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-69sequence-specific DNA binding transcription factors